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Journal: Journal of chemical information and modeling
Article Title: Modeling Small-Molecule Reactivity Identifies Promiscuous Bioactive Compounds
doi: 10.1021/acs.jcim.8b00104
Figure Lengend Snippet: Schematic of deep convolutional neural network models for predicting small-molecule reactivity and bioassay promiscuity. (A) Atoms in a test compound are represented as rows of numerical descriptors in a data matrix. These data are input to a neural network with one hidden layer of ten units. This neural network calculates four atom reactivity scores, each score predicts nucleophilic attack at that atom by GSH, cyanide, DNA, or protein. The top five atom reactivity scores in each category are then combined with molecule descriptors and are then used to calculate four molecule reactivity scores. Each molecule level reactivity score is then trained to predict conjugation of the input molecule to either GSH, cyanide, DNA, or protein.34,35 (B) Molecule-level reactivity scores are further combined with another neural network to produce a single integrated reactive promiscuity score. This network can then be trained to predict promiscuous bioactivity in HTS data sets. (C) A hybrid model combines molecule-level reactivity scores with binary indicators for PAINS substructure filter matches. A single hidden layer neural network is then trained to predict promiscuous behavior in HTS data sets.
Article Snippet: 34 , 35 Briefly, a
Techniques: Bioassay, Conjugation Assay